Tool that transforms GATE annotated documents into PubAnnotations
View the Project on GitHub nikolamilosevic86/GATE2PubAnnotation
GATE2PubAnnotation is a tool that transforms GATE annotated documents into PubAnnotations. This tool helps to publish your annotations made in GATE (General Architecture for Text Engineering) to PubAnnotation.org, where your annotations will be linked and publicly available.
GATE2PubAnnotation tool is written in Java and requires Java virtual machine installed on the machine.
Latest release can be downloaded from: https://github.com/nikolamilosevic86/GATE2PubAnnotation/releases/tag/0.1
GATE2PubAnnotation currently supports only conversion of denotations into PubAnnotation, but not relationships (co-reference)
GATEToPubAnnotation takes 3 parameters. The first one is file to GATE annotated file. The second is sourcedb (Source database) and the third one is sourceid (ID of the document in the database).
Command line example:
java -jar GATE2PubAnnotation.jar example/example.xml PMC PMC125532